dipy_info

Synopsis

Provides useful information about different files used in medical imaging. Any number of input files can be provided. The program identifies the type of file by its extension.

Usage

dipy_info [OPTIONS] input_files

Input Parameters

  • input_files

    Any number of Nifti1, bvals or bvecs files.

General Options

  • --b0_threshold

    Threshold used to find b0 volumes. (default: 50)

  • --bvecs_tol

    Threshold used to check that norm(bvec) = 1 +/- bvecs_tol b-vectors are unit vectors. (default: 0.01)

  • --bshell_thr

    Threshold for distinguishing b-values in different shells. (default: 100)

  • --reference

    Reference anatomy for tck/vtk/fib/dpy file. support (.nii or .nii.gz). (default: None)

References

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.