All functions

getModel()

Returns the Progeny Model

model_human_full

The full human linear model underlying PROGENy

model_mouse_full

The full mouse linear model underlying PROGENy

progeny()

Calculate PROGENy pathway scores from gene expression

progenyPerm()

Compute progeny pathway scores and assesses significance based on permutations

progenyScatter()

Calculate Progeny Scores with Permutations

saveProgenyPlots()

Function to save Progeny plots

vignette_data

The RNA data used in the progeny vignette